Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:69411088..69412917-chr6:69473045..69475700,2	K562	blood:
2	chr6:69469056..69471849-chr6:69472009..69475947,4	K562	blood:
3	chr6:69473849..69476721-chr6:69483757..69486701,2	K562	blood:
4	chr6:69472327..69475305-chr6:69480435..69482452,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1033521	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10484792	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11756306	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11962532	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13190871	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13192244	0.92[EUR][1000 genomes]
rs13199686	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13200410	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203525	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs13205909	0.88[EUR][1000 genomes]
rs13220538	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2585602	0.91[CEU][hapmap]
rs2585617	0.91[CEU][hapmap]
rs2746138	0.92[CEU][hapmap]
rs2802682	0.92[CEU][hapmap]
rs36099840	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416548	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294809	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446056	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9454617	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9454623	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69468400-69480000	Weak transcription	Fetal Lung	lung
3	chr6:69471600-69481600	Weak transcription	Brain Anterior Caudate	brain

Quick Search: