Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56061214..56063201-chr6:69518793..69520402,2	MCF-7	breast:
2	chr6:69513585..69517599-chr6:69517600..69520512,4	K562	blood:

Variant related genes	Relation type
ENSG00000136451	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1033521	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10484792	1.00[CEU][hapmap]
rs11756306	1.00[CEU][hapmap];0.92[GIH][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11962532	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13190871	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs13192244	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13199686	0.88[EUR][1000 genomes]
rs13200410	0.88[EUR][1000 genomes]
rs13203525	0.91[CEU][hapmap]
rs13220538	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1403920	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2585602	0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs2585617	0.91[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs2746138	0.91[CEU][hapmap]
rs2802682	0.91[CEU][hapmap]
rs36099840	0.94[EUR][1000 genomes]
rs62416548	0.88[EUR][1000 genomes]
rs9294809	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9446056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9454617	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69510000-69525000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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