Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69336943..69339880-chr6:69343535..69346281,2	K562	blood:
2	chr6:69331296..69333706-chr6:69336938..69339590,2	K562	blood:

Variant related genes	Relation type
ENSG00000230910	Chromatin interaction
ENSG00000135298	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1033521	0.91[CEU][hapmap]
rs10455673	1.00[ASN][1000 genomes]
rs10484792	0.91[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11756306	1.00[ASW][hapmap];0.90[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap]
rs12212114	1.00[ASN][1000 genomes]
rs13190871	0.91[CEU][hapmap]
rs13203525	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13205909	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13220538	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs1403920	0.91[CEU][hapmap]
rs17257244	1.00[ASN][1000 genomes]
rs2585602	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2746136	1.00[ASN][1000 genomes]
rs2746138	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2802678	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2802679	1.00[ASN][1000 genomes]
rs2802681	1.00[ASN][1000 genomes]
rs2802682	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]
rs9294809	0.91[CEU][hapmap]
rs9446056	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs9454623	0.91[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Phospholipid levels (plasma)	21829377	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69336600-69342600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69337000-69337800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:69337200-69338800	Enhancers	HUES48 Cell Line	embryonic stem cell

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