Variant report

Variant	rs17257244
Chromosome Location	chr6:69444341-69444342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10455673	1.00[ASN][1000 genomes]
rs10484792	1.00[ASN][1000 genomes]
rs12212114	1.00[ASN][1000 genomes]
rs13203525	1.00[ASN][1000 genomes]
rs13205909	1.00[ASN][1000 genomes]
rs2585602	1.00[ASN][1000 genomes]
rs2585617	1.00[ASN][1000 genomes]
rs2746136	1.00[ASN][1000 genomes]
rs2746138	1.00[ASN][1000 genomes]
rs2802678	1.00[ASN][1000 genomes]
rs2802679	1.00[ASN][1000 genomes]
rs2802681	1.00[ASN][1000 genomes]
rs2802682	1.00[ASN][1000 genomes]
rs72897104	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69445600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69442600-69447600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:69442800-69445600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:69442800-69445800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:69442800-69446200	Weak transcription	K562	blood
10	chr6:69444200-69444800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:69444200-69444800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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