Variant report

Variant	rs13203103
Chromosome Location	chr6:132097375-132097376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10452621	0.87[ASN][1000 genomes]
rs3844001	0.81[ASN][1000 genomes]
rs3844002	0.93[EUR][1000 genomes]
rs6569755	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6569756	0.90[EUR][1000 genomes]
rs6909145	0.90[EUR][1000 genomes]
rs6911602	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919565	0.88[EUR][1000 genomes]
rs7740856	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7759504	0.81[ASN][1000 genomes]
rs9321310	0.90[EUR][1000 genomes]
rs9321311	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9493086	0.90[EUR][1000 genomes]
rs9493087	0.90[EUR][1000 genomes]
rs9493088	0.90[EUR][1000 genomes]
rs9493089	0.90[EUR][1000 genomes]
rs9493100	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132094800-132099600	Weak transcription	Aorta	Aorta
2	chr6:132095200-132099600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:132095400-132099600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:132096600-132100600	Enhancers	Fetal Intestine Small	intestine
5	chr6:132096800-132100000	Enhancers	Fetal Intestine Large	intestine
6	chr6:132097000-132097400	Enhancers	Colonic Mucosa	Colon
7	chr6:132097000-132097400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:132097000-132100800	Enhancers	HepG2	liver
9	chr6:132097200-132097400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:132097200-132097400	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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