Variant report

Variant	rs3844001
Chromosome Location	chr6:132070881-132070882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132070029..132072019-chr6:132090822..132092403,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10452621	0.93[ASN][1000 genomes]
rs12526718	0.86[ASN][1000 genomes]
rs13203103	0.81[ASN][1000 genomes]
rs17060634	0.96[ASN][1000 genomes]
rs3843999	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3844002	0.87[ASN][1000 genomes]
rs3850251	0.89[ASN][1000 genomes]
rs6569755	0.86[ASN][1000 genomes]
rs6569756	0.86[ASN][1000 genomes]
rs6909145	0.87[ASN][1000 genomes]
rs6911602	0.80[ASN][1000 genomes]
rs6919565	0.87[ASN][1000 genomes]
rs6919723	0.83[ASN][1000 genomes]
rs6925774	0.83[ASN][1000 genomes]
rs7740856	0.86[ASN][1000 genomes]
rs7759504	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321310	0.87[ASN][1000 genomes]
rs9321311	0.86[ASN][1000 genomes]
rs9483336	0.81[ASN][1000 genomes]
rs9483337	0.87[ASN][1000 genomes]
rs9493086	0.88[ASN][1000 genomes]
rs9493087	0.88[ASN][1000 genomes]
rs9493088	0.87[ASN][1000 genomes]
rs9493089	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132066400-132071000	Weak transcription	HepG2	liver

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