Variant report

Variant	rs17060634
Chromosome Location	chr6:132062367-132062368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10452621	0.89[ASN][1000 genomes]
rs12526718	0.82[ASN][1000 genomes]
rs3843999	0.90[ASN][1000 genomes]
rs3844001	0.96[ASN][1000 genomes]
rs3844002	0.83[ASN][1000 genomes]
rs3850251	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569755	0.82[ASN][1000 genomes]
rs6569756	0.82[ASN][1000 genomes]
rs6909145	0.83[ASN][1000 genomes]
rs6919565	0.83[ASN][1000 genomes]
rs6919723	0.86[ASN][1000 genomes]
rs6925774	0.85[ASN][1000 genomes]
rs7740856	0.82[ASN][1000 genomes]
rs7759504	0.96[ASN][1000 genomes]
rs9321310	0.83[ASN][1000 genomes]
rs9321311	0.82[ASN][1000 genomes]
rs9483336	0.84[ASN][1000 genomes]
rs9483337	0.83[ASN][1000 genomes]
rs9493086	0.84[ASN][1000 genomes]
rs9493087	0.84[ASN][1000 genomes]
rs9493088	0.83[ASN][1000 genomes]
rs9493089	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132040600-132063200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:132048200-132065200	Weak transcription	Liver	Liver
3	chr6:132048400-132065200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:132055000-132065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:132055200-132065800	Weak transcription	K562	blood
6	chr6:132057600-132063000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:132061000-132065200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:132061800-132065400	Weak transcription	HepG2	liver

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