Variant report

Variant	rs13203172
Chromosome Location	chr6:134536698-134536699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1009840	0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1621042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17053580	0.82[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17063535	0.81[JPT][hapmap]
rs17063545	0.81[JPT][hapmap]
rs17063554	0.81[JPT][hapmap]
rs1743938	0.81[JPT][hapmap]
rs1743940	0.81[JPT][hapmap]
rs1743951	0.84[EUR][1000 genomes]
rs1743952	0.86[EUR][1000 genomes]
rs1763501	0.85[ASN][1000 genomes]
rs1763502	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1763509	0.93[JPT][hapmap]
rs1763510	0.89[ASW][hapmap];0.88[JPT][hapmap];0.89[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4895397	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896025	0.82[ASN][1000 genomes]
rs4896026	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937942	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs734738	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs744196	0.83[JPT][hapmap]
rs9493857	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13203172	ANKRD23	trans	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:134519400-134538200	Weak transcription	Ovary	ovary
3	chr6:134525200-134538000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:134529000-134537600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:134531200-134537000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:134531600-134537400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:134532800-134551200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:134533000-134537400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:134535800-134539400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:134536400-134536800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:134536400-134539600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:134536400-134551600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:134536600-134537200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:134536600-134537400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:134536600-134537400	Enhancers	K562	blood
16	chr6:134536600-134537600	Enhancers	Primary B cells from cord blood	blood

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