Variant report

Variant	rs734738
Chromosome Location	chr6:134568921-134568922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134568760..134570457-chr6:134573885..134575458,2	K562	blood:
2	chr6:134564852..134569014-chr6:134570433..134573870,3	K562	blood:
3	chr6:134495224..134497350-chr6:134568529..134571029,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1009840	0.89[JPT][hapmap]
rs13193056	0.84[ASN][1000 genomes]
rs13203172	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs1621042	0.83[JPT][hapmap]
rs17063535	0.83[JPT][hapmap]
rs17063563	0.83[JPT][hapmap]
rs1743936	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1763502	0.83[JPT][hapmap]
rs1763509	0.88[JPT][hapmap]
rs1763510	0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1763511	0.84[ASN][1000 genomes]
rs1763520	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4896028	0.83[JPT][hapmap]
rs744196	1.00[JPT][hapmap]
rs9493857	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134557800-134571000	Weak transcription	NH-A	brain
2	chr6:134561000-134569600	Weak transcription	Ovary	ovary
3	chr6:134562600-134569400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:134562600-134570600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:134562600-134574600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:134566000-134571400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:134566200-134569000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:134566200-134569000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:134566200-134569000	Enhancers	HMEC	breast
10	chr6:134566200-134570800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:134566200-134571200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:134566200-134572200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:134566200-134572200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:134566200-134572200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:134566200-134572200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:134566200-134572800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:134566400-134569400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:134566400-134570400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:134566600-134571000	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:134566600-134571600	Enhancers	Primary B cells from cord blood	blood
21	chr6:134566800-134569400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr6:134567000-134570000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:134567000-134570400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:134567800-134569800	Enhancers	Pancreas	Pancrea
25	chr6:134567800-134570000	Enhancers	HepG2	liver
26	chr6:134567800-134570800	Enhancers	Thymus	Thymus
27	chr6:134568000-134570600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:134568200-134569000	Flanking Active TSS	GM12878-XiMat	blood
29	chr6:134568200-134569200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:134568200-134569200	Enhancers	Hela-S3	cervix
31	chr6:134568200-134570600	Enhancers	Brain Hippocampus Middle	brain
32	chr6:134568200-134570600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:134568200-134571000	Enhancers	Brain Germinal Matrix	brain
34	chr6:134568200-134571000	Enhancers	Dnd41	blood
35	chr6:134568200-134571200	Enhancers	Fetal Muscle Leg	muscle
36	chr6:134568200-134572000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:134568200-134572200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:134568200-134575800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:134568400-134569000	Enhancers	Primary hematopoietic stem cells	blood
40	chr6:134568400-134569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:134568400-134569400	Enhancers	HSMM	muscle
42	chr6:134568400-134570600	Enhancers	Brain Angular Gyrus	brain
43	chr6:134568400-134571000	Enhancers	HSMMtube	muscle
44	chr6:134568400-134571600	Enhancers	Brain Cingulate Gyrus	brain
45	chr6:134568400-134573600	Enhancers	Brain Substantia Nigra	brain
46	chr6:134568600-134569000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:134568600-134569200	Flanking Active TSS	Primary T cells from cord blood	blood
48	chr6:134568600-134569400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr6:134568600-134569600	Enhancers	NHDF-Ad	bronchial
50	chr6:134568600-134570600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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