Variant report

Variant	rs13204703
Chromosome Location	chr6:140692862-140692863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11155107	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1121833	0.85[ASN][1000 genomes]
rs12055615	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12660474	0.82[ASN][1000 genomes]
rs12661752	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662046	0.82[ASN][1000 genomes]
rs12662848	0.86[ASN][1000 genomes]
rs12663424	0.86[ASN][1000 genomes]
rs12663444	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665797	0.82[ASN][1000 genomes]
rs13192756	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13194271	0.86[ASN][1000 genomes]
rs13208097	0.86[ASN][1000 genomes]
rs13213875	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13214458	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1496110	0.82[ASN][1000 genomes]
rs17053906	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17192	0.85[ASN][1000 genomes]
rs1856752	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050135	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2103669	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2328062	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34858573	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35626395	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35686278	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4323321	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4391280	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4562159	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs477498	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896508	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896509	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs520322	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs533610	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57291519	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321765	0.82[ASN][1000 genomes]
rs9321769	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373266	0.82[ASN][1000 genomes]
rs9373267	0.82[ASN][1000 genomes]
rs9373269	0.85[ASN][1000 genomes]
rs9373270	0.85[ASN][1000 genomes]
rs9373272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9373273	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9373274	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373276	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373278	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376506	0.82[ASN][1000 genomes]
rs9376511	0.85[ASN][1000 genomes]
rs9376512	0.85[ASN][1000 genomes]
rs9376518	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385908	0.86[ASN][1000 genomes]
rs9389772	0.82[ASN][1000 genomes]
rs9389773	0.81[ASN][1000 genomes]
rs9389780	0.82[ASN][1000 genomes]
rs9389781	0.82[ASN][1000 genomes]
rs9389782	0.81[ASN][1000 genomes]
rs9389783	0.82[ASN][1000 genomes]
rs9389784	0.85[ASN][1000 genomes]
rs9389785	0.85[ASN][1000 genomes]
rs9389789	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9389793	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389794	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399315	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399316	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403168	0.81[ASN][1000 genomes]
rs9403170	0.83[ASN][1000 genomes]
rs9403171	0.85[ASN][1000 genomes]
rs9403173	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403174	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403176	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403177	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9791338	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs997388	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140691800-140693000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:140692000-140693600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:140692200-140693000	Enhancers	Osteobl	bone
4	chr6:140692200-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:140692200-140693600	Enhancers	NHDF-Ad	bronchial
6	chr6:140692200-140693800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:140692400-140693200	Weak transcription	NHLF	lung
8	chr6:140692400-140693400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:140692400-140693600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:140692400-140693800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:140692600-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:140692600-140693600	Enhancers	Fetal Heart	heart
13	chr6:140692800-140693000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:140692800-140693600	Enhancers	HUES64 Cell Line	embryonic stem cell

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