Variant report

Variant	rs12055615
Chromosome Location	chr6:140642012-140642013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140637422..140640107-chr6:140640485..140642054,2	K562	blood:

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10872525	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11155107	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119397	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.92[ASN][1000 genomes]
rs1121833	0.98[ASN][1000 genomes]
rs12174980	0.92[ASN][1000 genomes]
rs12660474	0.95[ASN][1000 genomes]
rs12660560	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12661752	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662046	0.95[ASN][1000 genomes]
rs12662151	0.86[ASN][1000 genomes]
rs12662848	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663424	0.99[ASN][1000 genomes]
rs12663444	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663480	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs12665797	0.95[ASN][1000 genomes]
rs13191189	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs13192756	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13194271	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13204703	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13207048	0.92[ASN][1000 genomes]
rs13208097	0.99[ASN][1000 genomes]
rs13213875	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13214458	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1496110	0.95[ASN][1000 genomes]
rs1496112	0.92[ASN][1000 genomes]
rs1496113	0.92[ASN][1000 genomes]
rs1519592	0.92[ASN][1000 genomes]
rs1587171	0.92[ASN][1000 genomes]
rs1603348	0.92[ASN][1000 genomes]
rs1603349	0.92[ASN][1000 genomes]
rs17053906	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069852	0.92[ASN][1000 genomes]
rs17069854	0.92[ASN][1000 genomes]
rs17192	0.98[ASN][1000 genomes]
rs1856752	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2020197	0.87[ASN][1000 genomes]
rs2050135	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2103669	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328062	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34358600	0.88[ASN][1000 genomes]
rs34753441	0.92[ASN][1000 genomes]
rs34858573	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34984534	0.92[ASN][1000 genomes]
rs35461592	0.81[ASN][1000 genomes]
rs35465283	0.92[ASN][1000 genomes]
rs35626395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686278	0.88[ASN][1000 genomes]
rs36074095	0.92[ASN][1000 genomes]
rs4323321	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391280	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4562159	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4637665	0.92[ASN][1000 genomes]
rs477498	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896508	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896509	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520322	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs533610	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57291519	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs578340	0.82[ASN][1000 genomes]
rs62431097	0.88[ASN][1000 genomes]
rs62431100	0.87[ASN][1000 genomes]
rs62431101	0.88[ASN][1000 genomes]
rs66460448	0.86[ASN][1000 genomes]
rs71562538	0.90[ASN][1000 genomes]
rs7758187	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7761894	0.88[ASN][1000 genomes]
rs9321765	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9321769	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373258	0.88[ASN][1000 genomes]
rs9373259	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.89[ASN][1000 genomes]
rs9373260	0.92[ASN][1000 genomes]
rs9373261	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9373262	0.92[ASN][1000 genomes]
rs9373266	0.95[ASN][1000 genomes]
rs9373267	0.93[ASN][1000 genomes]
rs9373269	0.98[ASN][1000 genomes]
rs9373270	0.98[ASN][1000 genomes]
rs9373272	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373273	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373274	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373276	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373278	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376497	0.88[ASN][1000 genomes]
rs9376498	0.88[ASN][1000 genomes]
rs9376500	0.84[ASN][1000 genomes]
rs9376502	0.92[ASN][1000 genomes]
rs9376503	0.91[ASN][1000 genomes]
rs9376504	0.92[ASN][1000 genomes]
rs9376506	0.95[ASN][1000 genomes]
rs9376508	0.81[ASN][1000 genomes]
rs9376511	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9376512	0.98[ASN][1000 genomes]
rs9376518	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385899	0.86[ASN][1000 genomes]
rs9385900	0.88[ASN][1000 genomes]
rs9385901	0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs9385902	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9385903	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.92[ASN][1000 genomes]
rs9385906	0.92[ASN][1000 genomes]
rs9385908	0.99[ASN][1000 genomes]
rs9389749	0.88[ASN][1000 genomes]
rs9389750	0.88[ASN][1000 genomes]
rs9389751	0.89[ASN][1000 genomes]
rs9389753	0.92[ASN][1000 genomes]
rs9389754	0.92[ASN][1000 genomes]
rs9389755	0.92[ASN][1000 genomes]
rs9389757	0.92[ASN][1000 genomes]
rs9389758	0.81[ASN][1000 genomes]
rs9389760	0.92[ASN][1000 genomes]
rs9389763	0.91[ASN][1000 genomes]
rs9389767	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9389768	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9389772	0.95[ASN][1000 genomes]
rs9389773	0.94[ASN][1000 genomes]
rs9389774	0.90[ASN][1000 genomes]
rs9389775	0.84[ASN][1000 genomes]
rs9389776	0.92[ASN][1000 genomes]
rs9389777	0.92[ASN][1000 genomes]
rs9389780	0.95[ASN][1000 genomes]
rs9389781	0.95[ASN][1000 genomes]
rs9389782	0.94[ASN][1000 genomes]
rs9389783	0.95[ASN][1000 genomes]
rs9389784	0.98[ASN][1000 genomes]
rs9389785	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389789	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389793	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9389794	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399308	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.88[ASN][1000 genomes]
rs9399310	0.92[ASN][1000 genomes]
rs9399315	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399316	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403148	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9403149	0.86[ASN][1000 genomes]
rs9403150	0.92[ASN][1000 genomes]
rs9403151	0.92[ASN][1000 genomes]
rs9403153	0.92[ASN][1000 genomes]
rs9403155	0.92[ASN][1000 genomes]
rs9403156	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9403157	0.92[ASN][1000 genomes]
rs9403159	0.92[ASN][1000 genomes]
rs9403165	0.91[ASN][1000 genomes]
rs9403168	0.94[ASN][1000 genomes]
rs9403170	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9403171	0.98[ASN][1000 genomes]
rs9403173	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403174	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403176	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403177	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9484347	0.89[ASN][1000 genomes]
rs9791338	0.87[ASN][1000 genomes]
rs997388	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140638600-140642200	Enhancers	Fetal Heart	heart
2	chr6:140639400-140643800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:140640000-140643200	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:140640400-140642200	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:140640600-140642200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:140640600-140643400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:140640600-140643600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:140640800-140642200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:140640800-140642200	Enhancers	Osteobl	bone
10	chr6:140640800-140642400	Enhancers	Fetal Lung	lung
11	chr6:140640800-140642800	Enhancers	NHLF	lung
12	chr6:140640800-140643000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140640800-140643000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:140640800-140643200	Enhancers	Colon Smooth Muscle	Colon
15	chr6:140641000-140643200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:140641000-140643800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:140641200-140642600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:140641200-140643200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:140641400-140642200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:140641400-140642600	Weak transcription	HSMMtube	muscle
21	chr6:140641400-140642600	Enhancers	HUVEC	blood vessel
22	chr6:140641400-140643200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140641400-140643200	Enhancers	Primary B cells from cord blood	blood
24	chr6:140641400-140658000	Weak transcription	K562	blood
25	chr6:140641600-140642800	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:140641600-140642800	Enhancers	Fetal Kidney	kidney
27	chr6:140641600-140647200	Weak transcription	Aorta	Aorta
28	chr6:140641800-140642200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr6:140641800-140642200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:140641800-140642400	Weak transcription	Brain Angular Gyrus	brain
31	chr6:140641800-140642600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:140641800-140642800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:140641800-140642800	Enhancers	Liver	Liver
34	chr6:140641800-140643000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:140642000-140642200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:140642000-140642800	Enhancers	Ovary	ovary
37	chr6:140642000-140643000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:140642000-140643200	Enhancers	Brain Hippocampus Middle	brain
39	chr6:140642000-140643800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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