Variant report

Variant	rs578340
Chromosome Location	chr6:140619321-140619322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140617127..140621095-chr6:140621488..140626438,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10872525	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs11155107	0.82[ASN][1000 genomes]
rs1119397	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1121833	0.80[ASN][1000 genomes]
rs12055615	0.82[ASN][1000 genomes]
rs12660560	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12662848	0.82[ASN][1000 genomes]
rs12663424	0.83[ASN][1000 genomes]
rs12663444	0.82[ASN][1000 genomes]
rs12663480	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs13191189	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13194271	0.83[ASN][1000 genomes]
rs13208097	0.83[ASN][1000 genomes]
rs13214458	0.91[CHB][hapmap]
rs17192	0.80[ASN][1000 genomes]
rs35626395	0.82[ASN][1000 genomes]
rs7758187	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9373259	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9373261	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9373269	0.80[ASN][1000 genomes]
rs9373270	0.80[ASN][1000 genomes]
rs9373272	0.82[ASN][1000 genomes]
rs9376494	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs9376511	0.80[ASN][1000 genomes]
rs9376512	0.80[ASN][1000 genomes]
rs9385901	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs9385902	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9385903	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9385908	0.83[ASN][1000 genomes]
rs9389767	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9389768	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9389783	0.80[ASN][1000 genomes]
rs9389784	0.80[ASN][1000 genomes]
rs9389785	0.80[ASN][1000 genomes]
rs9389789	0.82[ASN][1000 genomes]
rs9399308	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9403148	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9403156	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9403171	0.80[ASN][1000 genomes]
rs9403173	0.80[ASN][1000 genomes]
rs997388	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140610800-140624600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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