Variant report

Variant	rs13205723
Chromosome Location	chr6:117798847-117798848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117797620..117801329-chr6:117802925..117805407,3	MCF-7	breast:
2	chr6:117797831..117799702-chr6:117802515..117805127,4	MCF-7	breast:
3	chr6:117788477..117790267-chr6:117797772..117800406,2	MCF-7	breast:
4	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
5	chr6:117797897..117799784-chr6:117801599..117803963,2	K562	blood:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12528785	0.90[EUR][1000 genomes]
rs13192067	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192130	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192511	0.80[ASN][1000 genomes]
rs13193572	0.85[ASN][1000 genomes]
rs13195478	0.85[ASN][1000 genomes]
rs13195673	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196791	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13202267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13202514	0.89[ASN][1000 genomes]
rs13205753	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13205986	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206063	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13206490	0.85[ASN][1000 genomes]
rs13207962	0.85[ASN][1000 genomes]
rs13210963	0.85[ASN][1000 genomes]
rs13211956	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212002	0.86[ASN][1000 genomes]
rs13216575	0.84[ASN][1000 genomes]
rs13217856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218378	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1407181	0.86[ASN][1000 genomes]
rs1407182	0.87[ASN][1000 genomes]
rs17079281	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1853146	0.86[ASN][1000 genomes]
rs1853147	0.85[ASN][1000 genomes]
rs1885064	0.85[ASN][1000 genomes]
rs2018055	0.85[ASN][1000 genomes]
rs2104064	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34059490	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34331459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431655	0.89[EUR][1000 genomes]
rs35002781	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35599105	0.87[ASN][1000 genomes]
rs36045731	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4357172	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946258	0.92[EUR][1000 genomes]
rs62433102	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62433108	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6568976	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568977	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910338	0.80[ASN][1000 genomes]
rs6914910	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930292	0.86[ASN][1000 genomes]
rs6936540	0.86[ASN][1000 genomes]
rs6940327	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941824	0.80[ASN][1000 genomes]
rs6942067	0.86[ASN][1000 genomes]
rs717969	0.86[ASN][1000 genomes]
rs717970	0.86[ASN][1000 genomes]
rs722359	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739294	0.80[ASN][1000 genomes]
rs7745840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749229	0.80[ASN][1000 genomes]
rs7756187	0.83[ASN][1000 genomes]
rs7763979	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929058	0.82[EUR][1000 genomes]
rs9481719	0.80[ASN][1000 genomes]
rs9489199	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13205723	DCBLD1	cis	Thyroid	GTEx
rs13205723	DCBLD1	cis	Whole Blood	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117794800-117799200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:117797200-117800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:117798200-117800200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:117798200-117800200	Enhancers	Fetal Intestine Large	intestine
5	chr6:117798400-117799200	Enhancers	HepG2	liver
6	chr6:117798400-117799400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:117798400-117799400	Enhancers	GM12878-XiMat	blood
8	chr6:117798400-117800000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:117798600-117799000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:117798600-117799600	Weak transcription	Small Intestine	intestine
11	chr6:117798600-117800200	Enhancers	A549	lung
12	chr6:117798600-117802600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:117798800-117799600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:117798800-117800000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:117798800-117801400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links