Variant report

Variant	rs13205986
Chromosome Location	chr6:117791674-117791675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117784575..117787348-chr6:117789977..117792089,2	K562	blood:
2	chr6:117785808..117787348-chr6:117789977..117791969,2	K562	blood:
3	chr6:117789944..117793123-chr6:117802040..117805082,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12528785	0.94[EUR][1000 genomes]
rs13192067	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192130	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13192511	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs13193572	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs13195478	0.81[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs13195673	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196791	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198016	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198224	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13202267	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202333	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13202514	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13205723	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205753	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13206063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13206490	0.85[ASN][1000 genomes]
rs13207962	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs13210963	0.81[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs13211956	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212002	0.86[ASN][1000 genomes]
rs13216575	0.84[ASN][1000 genomes]
rs13217856	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218378	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1407181	0.86[ASN][1000 genomes]
rs1407182	0.87[ASN][1000 genomes]
rs17079281	0.84[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1853146	0.86[ASN][1000 genomes]
rs1853147	0.85[ASN][1000 genomes]
rs1885064	0.84[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2018055	0.85[ASN][1000 genomes]
rs2104064	0.86[ASW][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2273601	0.84[JPT][hapmap]
rs34059490	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34331459	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431655	0.90[EUR][1000 genomes]
rs35002781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35599105	0.87[ASN][1000 genomes]
rs36045731	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777980	0.84[JPT][hapmap]
rs3777982	0.84[JPT][hapmap]
rs4357172	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632931	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946258	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs62433102	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62433108	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6568976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568978	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568979	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910338	0.80[ASN][1000 genomes]
rs6914910	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930292	0.95[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6936540	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6940327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941824	0.80[ASN][1000 genomes]
rs6942067	0.86[ASN][1000 genomes]
rs717969	0.86[ASN][1000 genomes]
rs717970	0.86[ASN][1000 genomes]
rs722359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739294	0.80[ASN][1000 genomes]
rs7745840	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746536	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749229	0.80[ASN][1000 genomes]
rs7756187	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7763979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764024	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929058	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs9481719	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs9489152	0.85[JPT][hapmap]
rs9489193	0.89[JPT][hapmap]
rs9489199	0.87[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13205986	DCBLD1	cis	multi-tissue	Pritchard
rs13205986	DCBLD1	cis	Whole Blood	GTEx
rs13205986	DCBLD1	cis	Thyroid	GTEx
rs13205986	GOPC	cis	parietal	SCAN
rs13205986	FRK	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links