Variant report
Variant | rs13205727 |
---|---|
Chromosome Location | chr6:164400622-164400623 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10484512 | 0.86[AMR][1000 genomes] |
rs10484513 | 0.86[AMR][1000 genomes] |
rs10484515 | 0.83[AMR][1000 genomes] |
rs10945939 | 0.86[AMR][1000 genomes] |
rs10945940 | 0.86[AMR][1000 genomes] |
rs10945941 | 0.87[AMR][1000 genomes] |
rs10945942 | 0.87[AMR][1000 genomes] |
rs10945944 | 0.87[AMR][1000 genomes] |
rs10945945 | 0.87[AMR][1000 genomes] |
rs12209088 | 0.82[AMR][1000 genomes] |
rs12209089 | 0.80[AMR][1000 genomes] |
rs13202408 | 0.90[AMR][1000 genomes] |
rs13216364 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13216370 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs13217167 | 0.92[AMR][1000 genomes] |
rs13217302 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13217313 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13217322 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1545107 | 0.86[AMR][1000 genomes] |
rs34021940 | 0.83[AMR][1000 genomes] |
rs34091550 | 0.84[AMR][1000 genomes] |
rs34413611 | 0.84[AMR][1000 genomes] |
rs34561573 | 0.86[AMR][1000 genomes] |
rs34727935 | 0.81[AMR][1000 genomes] |
rs35668088 | 0.87[AMR][1000 genomes] |
rs4709799 | 0.89[AMR][1000 genomes] |
rs4709800 | 0.89[AMR][1000 genomes] |
rs4709802 | 0.82[AMR][1000 genomes] |
rs62435513 | 0.85[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018860 | chr6:163939347-164532579 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv538526 | chr6:163939347-164532579 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
3 | nsv1026707 | chr6:164188210-164749206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv538527 | chr6:164188210-164749206 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv830858 | chr6:164296054-164455743 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv5582 | chr6:164390353-164405727 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:164389200-164404600 | Weak transcription | Fetal Heart | heart |
2 | chr6:164393800-164413800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr6:164399000-164405400 | Weak transcription | Pancreas | Pancrea |