Variant report

Variant	rs13206757
Chromosome Location	chr6:37092358-37092359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37068856..37071851-chr6:37091026..37093597,3	K562	blood:
2	chr6:37070053..37071705-chr6:37091943..37094199,2	K562	blood:
3	chr6:37089839..37093483-chr6:37096166..37098132,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12204960	0.92[ASN][1000 genomes]
rs62408363	0.92[ASN][1000 genomes]
rs62408364	0.92[ASN][1000 genomes]
rs72849065	0.92[ASN][1000 genomes]
rs7744112	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37079000-37092400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:37079200-37092600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:37084600-37093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:37084800-37093400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:37087000-37093600	Enhancers	HepG2	liver
6	chr6:37088000-37093400	Weak transcription	Hela-S3	cervix
7	chr6:37089600-37092400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:37089800-37093000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:37090600-37093400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:37090800-37092800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:37090800-37092800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:37091000-37092600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:37091000-37092800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:37091000-37093000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:37091000-37093400	Enhancers	Placenta	Placenta
16	chr6:37091200-37092600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:37091200-37093400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:37091200-37093600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:37091200-37093600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37091200-37093600	Weak transcription	Osteobl	bone
21	chr6:37091200-37093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:37091200-37095800	Weak transcription	NHDF-Ad	bronchial
23	chr6:37091400-37092600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:37091400-37092600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:37091400-37093400	Weak transcription	NH-A	brain
26	chr6:37091400-37095000	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:37091600-37092400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:37091600-37092600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:37091800-37092800	Enhancers	K562	blood
30	chr6:37091800-37093000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:37092000-37092600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:37092000-37092600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:37092200-37093000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:37092200-37093000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:37092200-37093200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:37092200-37093400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:37092200-37095000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links