Variant report

Variant	rs7744112
Chromosome Location	chr6:37086284-37086285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12204960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206757	0.92[ASN][1000 genomes]
rs1927871	0.81[ASN][1000 genomes]
rs62408363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62408364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849065	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7744112	FGD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37079000-37092400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:37079200-37092600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:37079400-37087400	Weak transcription	Placenta	Placenta
6	chr6:37081400-37086400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37082000-37087600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:37083400-37090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:37083400-37090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37084600-37087000	Weak transcription	HepG2	liver
11	chr6:37084600-37087200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:37084600-37093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:37084800-37089200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:37084800-37091200	Weak transcription	K562	blood
15	chr6:37084800-37093400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:37085400-37089200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:37085400-37089200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:37085400-37090800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:37085400-37092000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37085600-37089200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:37085800-37089000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:37086000-37087000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:37086000-37089400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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