Variant report

Variant	rs1927871
Chromosome Location	chr6:37071807-37071808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37068856..37071851-chr6:37091026..37093597,3	K562	blood:
2	chr6:37068352..37070883-chr6:37071003..37073055,2	MCF-7	breast:
3	chr6:37070631..37074042-chr6:37078630..37081482,4	K562	blood:
4	chr6:37068687..37073777-chr6:37134498..37141363,15	MCF-7	breast:
5	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
6	chr6:37071806..37074553-chr6:37075851..37078710,2	MCF-7	breast:
7	chr6:37070353..37072006-chr6:37094783..37097626,2	K562	blood:
8	chr6:37070177..37072965-chr6:37138030..37141701,4	K562	blood:
9	chr6:37059067..37063472-chr6:37069651..37072705,4	K562	blood:
10	chr6:37071011..37072656-chr6:37100071..37101969,2	MCF-7	breast:
11	chr6:37068309..37074081-chr6:37136012..37144014,7	K562	blood:
12	chr6:37071266..37073846-chr6:37079967..37081482,2	K562	blood:
13	chr6:37060206..37065655-chr6:37067548..37072519,8	K562	blood:
14	chr6:37071276..37073257-chr6:37076145..37078441,2	K562	blood:
15	chr6:37017932..37019663-chr6:37069414..37072213,2	K562	blood:
16	chr6:37018452..37020130-chr6:37071233..37072925,2	K562	blood:
17	chr6:37061371..37064307-chr6:37071274..37072804,2	MCF-7	breast:
18	chr6:37069426..37072676-chr6:37136680..37139369,3	MCF-7	breast:
19	chr6:37069927..37072668-chr6:37116873..37118423,2	K562	blood:
20	chr6:37070665..37072516-chr6:37086357..37088909,2	MCF-7	breast:
21	chr6:37069809..37073180-chr6:37101170..37104967,5	MCF-7	breast:
22	chr6:37070506..37072299-chr6:37108900..37111615,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000216412	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12204960	0.81[ASN][1000 genomes]
rs2293381	1.00[YRI][hapmap]
rs62408363	0.81[ASN][1000 genomes]
rs62408364	0.81[ASN][1000 genomes]
rs72849065	0.81[ASN][1000 genomes]
rs7744112	0.81[ASN][1000 genomes]
rs9394404	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37069000-37072000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37070000-37072000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:37070600-37072400	Weak transcription	Gastric	stomach
4	chr6:37070800-37072000	Flanking Active TSS	Rectal Smooth Muscle	rectum
5	chr6:37070800-37072800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:37070800-37075400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:37071000-37072000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:37071000-37072000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr6:37071000-37072400	Enhancers	Fetal Heart	heart
10	chr6:37071000-37073600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:37071000-37073600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:37071000-37073600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:37071000-37074400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:37071200-37072000	Enhancers	Primary T cells from cord blood	blood
15	chr6:37071200-37072000	Enhancers	Fetal Brain Male	brain
16	chr6:37071200-37072000	Enhancers	GM12878-XiMat	blood
17	chr6:37071200-37072600	Enhancers	Fetal Stomach	stomach
18	chr6:37071200-37073000	Enhancers	Fetal Thymus	thymus
19	chr6:37071200-37073600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:37071200-37073600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:37071200-37073800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37071200-37073800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:37071200-37074200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:37071200-37074800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:37071200-37075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:37071200-37075400	Enhancers	Fetal Intestine Large	intestine
27	chr6:37071200-37075400	Enhancers	Placenta	Placenta
28	chr6:37071400-37072000	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:37071400-37072000	Enhancers	HSMM	muscle
30	chr6:37071400-37072000	Enhancers	HUVEC	blood vessel
31	chr6:37071400-37072400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:37071400-37072400	Weak transcription	Lung	lung
33	chr6:37071400-37072600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:37071400-37072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:37071400-37072800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:37071400-37072800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:37071400-37072800	Weak transcription	Spleen	Spleen
38	chr6:37071400-37073000	Enhancers	Pancreas	Pancrea
39	chr6:37071400-37073600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:37071400-37073600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37071400-37074600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr6:37071400-37074800	Weak transcription	Right Ventricle	heart
43	chr6:37071400-37077800	Weak transcription	Fetal Lung	lung
44	chr6:37071400-37081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:37071600-37072000	Enhancers	Brain Anterior Caudate	brain
46	chr6:37071600-37072000	Weak transcription	Ovary	ovary
47	chr6:37071600-37072400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr6:37071600-37072400	Enhancers	Primary B cells from cord blood	blood
49	chr6:37071600-37072800	Enhancers	HSMMtube	muscle
50	chr6:37071600-37073000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links