Variant report

Variant	rs9394404
Chromosome Location	chr6:37077856-37077857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37071806..37074553-chr6:37075851..37078710,2	MCF-7	breast:
2	chr6:37016361..37018165-chr6:37077511..37079203,2	K562	blood:
3	chr6:37026757..37029218-chr6:37077573..37079658,2	K562	blood:
4	chr6:37026387..37030329-chr6:37076623..37079658,4	K562	blood:
5	chr6:37035193..37037363-chr6:37076365..37078969,2	K562	blood:
6	chr6:37074778..37077520-chr6:37077678..37080742,3	K562	blood:
7	chr6:37071276..37073257-chr6:37076145..37078441,2	K562	blood:
8	chr6:37076824..37080028-chr6:37133867..37138322,4	K562	blood:
9	chr6:37061973..37063628-chr6:37076355..37078503,2	K562	blood:
10	chr6:37069677..37071313-chr6:37076880..37078736,2	MCF-7	breast:
11	chr6:37077341..37079658-chr6:37138749..37140345,2	K562	blood:
12	chr6:37074778..37076702-chr6:37077678..37080276,2	K562	blood:
13	chr6:37073303..37075994-chr6:37076080..37077864,2	MCF-7	breast:
14	chr6:37076816..37079020-chr6:37138610..37140680,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1927871	1.00[YRI][hapmap]
rs2293381	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37071400-37081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37071800-37079200	Enhancers	Fetal Intestine Small	intestine
3	chr6:37071800-37080200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:37073200-37078000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:37073600-37078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:37073600-37082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:37073800-37083000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:37075400-37081600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:37076800-37079200	Enhancers	Fetal Intestine Large	intestine
12	chr6:37077000-37079200	Enhancers	Ovary	ovary
13	chr6:37077000-37079400	Enhancers	Placenta	Placenta
14	chr6:37077200-37078000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:37077200-37078000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:37077200-37078600	Enhancers	Stomach Mucosa	stomach
17	chr6:37077200-37078800	Enhancers	Fetal Muscle Leg	muscle
18	chr6:37077200-37079000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:37077200-37080200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:37077200-37080200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:37077200-37080400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:37077200-37080600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:37077200-37081000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr6:37077400-37078000	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:37077400-37078000	Enhancers	Left Ventricle	heart
26	chr6:37077400-37078200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:37077400-37078200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:37077400-37078800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:37077400-37078800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:37077400-37078800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:37077400-37078800	Enhancers	Hela-S3	cervix
32	chr6:37077400-37078800	Flanking Active TSS	K562	blood
33	chr6:37077400-37079000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:37077400-37079000	Enhancers	Adipose Nuclei	Adipose
35	chr6:37077400-37079000	Flanking Active TSS	HepG2	liver
36	chr6:37077400-37079200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:37077400-37080200	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr6:37077600-37078000	Enhancers	Fetal Heart	heart
39	chr6:37077600-37078200	Enhancers	Small Intestine	intestine
40	chr6:37077600-37078600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:37077600-37078600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:37077600-37078600	Enhancers	GM12878-XiMat	blood
43	chr6:37077600-37078800	Enhancers	Fetal Stomach	stomach
44	chr6:37077600-37078800	Enhancers	Gastric	stomach
45	chr6:37077600-37078800	Enhancers	A549	lung
46	chr6:37077600-37082000	Weak transcription	Pancreas	Pancrea
47	chr6:37077800-37078200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:37077800-37078200	Weak transcription	Lung	lung
49	chr6:37077800-37078800	Enhancers	Fetal Kidney	kidney
50	chr6:37077800-37078800	Enhancers	Pancreatic Islets	Pancreatic Islet

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