Variant report

Variant	rs1320884
Chromosome Location	chr7:26421428-26421429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1011389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525755	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2525757	0.86[ASN][1000 genomes]
rs2698716	0.80[EUR][1000 genomes]
rs2699803	0.96[ASN][1000 genomes]
rs2699808	0.80[EUR][1000 genomes]
rs2699809	0.80[EUR][1000 genomes]
rs2699814	0.85[EUR][1000 genomes]
rs2699816	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1320884	SNX10	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26417200-26421600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:26417200-26421600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:26417200-26427400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:26418400-26421600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:26418600-26436000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:26420600-26421600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:26420600-26421600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:26421000-26421600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
9	chr7:26421400-26421600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:26421400-26422400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:26421400-26422600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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