Variant report

Variant	rs2525757
Chromosome Location	chr7:26428795-26428796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1011389	0.86[ASN][1000 genomes]
rs1320884	0.86[ASN][1000 genomes]
rs2158375	0.86[ASN][1000 genomes]
rs2525755	0.85[ASN][1000 genomes]
rs2699803	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26418600-26436000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:26427800-26430200	Enhancers	Brain Germinal Matrix	brain
3	chr7:26428200-26429200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:26428200-26429400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:26428200-26429600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:26428200-26430000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:26428200-26436000	Weak transcription	Fetal Brain Male	brain
8	chr7:26428200-26437400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:26428400-26428800	Enhancers	GM12878-XiMat	blood
10	chr7:26428400-26429600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:26428400-26436800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:26428400-26436800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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