Variant report

Variant	rs13209052
Chromosome Location	chr6:5832125-5832126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13208920	0.92[ASN][1000 genomes]
rs1819202	0.95[EUR][1000 genomes]
rs6597164	0.86[EUR][1000 genomes]
rs6597165	0.86[EUR][1000 genomes]
rs6597166	0.86[EUR][1000 genomes]
rs6597167	0.86[EUR][1000 genomes]
rs6908228	0.86[EUR][1000 genomes]
rs6941234	0.86[EUR][1000 genomes]
rs7763309	0.85[EUR][1000 genomes]
rs7772449	0.90[EUR][1000 genomes]
rs9378987	0.88[EUR][1000 genomes]
rs942112	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9504531	0.88[EUR][1000 genomes]
rs9504540	0.98[ASN][1000 genomes]
rs9504541	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv970075	chr6:5829270-5841514	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus
2	chr6:5828200-5833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:5829200-5835000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:5830400-5833400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:5830600-5833600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:5830600-5834000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:5830600-5834200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:5830800-5833000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:5830800-5834000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:5831000-5833400	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:5831000-5834000	Enhancers	Primary B cells from cord blood	blood
12	chr6:5831200-5832200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:5831200-5832600	Enhancers	Spleen	Spleen
14	chr6:5831400-5832600	Enhancers	Adipose Nuclei	Adipose
15	chr6:5831400-5834000	Enhancers	Lung	lung
16	chr6:5831600-5832200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:5831600-5832200	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:5831600-5832200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:5831600-5832200	Enhancers	Fetal Muscle Leg	muscle
20	chr6:5831600-5832200	Enhancers	Placenta	Placenta
21	chr6:5831600-5832200	Enhancers	Fetal Stomach	stomach
22	chr6:5831600-5832200	Enhancers	Left Ventricle	heart
23	chr6:5831600-5832200	Genic enhancers	Right Atrium	heart
24	chr6:5831600-5832200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:5831600-5832200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:5831600-5832400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:5831600-5832400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr6:5831600-5832400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:5831600-5832400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr6:5831600-5832400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:5831600-5832400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:5831600-5832400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr6:5831600-5832400	Flanking Active TSS	Dnd41	blood
34	chr6:5831600-5832600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:5831600-5832600	Enhancers	GM12878-XiMat	blood
36	chr6:5831600-5834600	Enhancers	Thymus	Thymus
37	chr6:5831800-5832200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr6:5831800-5832200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:5832000-5832200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr6:5832000-5832200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr6:5832000-5832200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr6:5832000-5832200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr6:5832000-5832200	Enhancers	Small Intestine	intestine
44	chr6:5832000-5832200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr6:5832000-5832400	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr6:5832000-5832400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr6:5832000-5834000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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