Variant report

Variant	rs7772449
Chromosome Location	chr6:5813980-5813981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13209052	0.90[EUR][1000 genomes]
rs1819202	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6597164	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6597165	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6597166	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6597167	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941234	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9378987	0.94[EUR][1000 genomes]
rs942112	0.90[EUR][1000 genomes]
rs9504531	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9504541	0.86[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5809600-5815200	Enhancers	Fetal Thymus	thymus
2	chr6:5813400-5815400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:5813600-5814000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr6:5813600-5814000	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr6:5813600-5814400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:5813600-5815000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:5813600-5815000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:5813600-5815200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:5813600-5815200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:5813600-5815200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:5813600-5815400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:5813800-5814000	Flanking Active TSS	GM12878-XiMat	blood
13	chr6:5813800-5814200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:5813800-5814400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr6:5813800-5815200	Enhancers	Primary T cells from cord blood	blood
16	chr6:5813800-5815200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:5813800-5815200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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