Variant report

Variant	rs13210320
Chromosome Location	chr6:44035374-44035375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44033577..44035430-chr6:44041179..44044007,2	MCF-7	breast:
2	chr6:43735113..43739630-chr6:44031691..44035544,7	K562	blood:
3	chr6:44030222..44032797-chr6:44035126..44037771,3	MCF-7	breast:
4	chr6:43730164..43744120-chr6:44034600..44052665,50	K562	blood:
5	chr6:44028252..44030962-chr6:44034366..44036561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237686	Chromatin interaction
ENSG00000231881	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000272114	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2236061	0.95[EUR][1000 genomes]
rs4714762	1.00[AFR][1000 genomes]
rs62403186	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9349270	0.93[EUR][1000 genomes]
rs9381286	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9381287	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44005800-44036800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:44020800-44036200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:44022400-44040400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44024000-44036200	Enhancers	HMEC	breast
5	chr6:44024000-44036600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:44024600-44035800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:44030000-44040800	Weak transcription	Gastric	stomach
8	chr6:44030200-44036000	Enhancers	GM12878-XiMat	blood
9	chr6:44030200-44040400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:44031000-44035400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:44031200-44040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:44031400-44036600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:44031600-44036000	Enhancers	Osteobl	bone
14	chr6:44032600-44036200	Weak transcription	Esophagus	oesophagus
15	chr6:44033200-44036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:44033200-44040000	Enhancers	K562	blood
17	chr6:44033200-44040400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:44033400-44039400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:44033400-44040200	Weak transcription	Colonic Mucosa	Colon
20	chr6:44033600-44039400	Weak transcription	Fetal Heart	heart
21	chr6:44033800-44040200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:44034000-44039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:44034000-44040000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:44034000-44040200	Weak transcription	Lung	lung
25	chr6:44034200-44036800	Enhancers	Fetal Muscle Leg	muscle
26	chr6:44034200-44038200	Enhancers	Hela-S3	cervix
27	chr6:44034400-44035400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:44034400-44036000	Enhancers	NH-A	brain
29	chr6:44034400-44036600	Enhancers	Fetal Stomach	stomach
30	chr6:44034400-44039200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:44034600-44035800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:44034600-44036000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:44034600-44036400	Enhancers	HSMM	muscle
34	chr6:44034600-44036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:44034600-44040400	Weak transcription	Spleen	Spleen
36	chr6:44034800-44035400	Enhancers	Stomach Smooth Muscle	stomach
37	chr6:44034800-44035400	Enhancers	A549	lung
38	chr6:44034800-44035600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr6:44034800-44035600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:44034800-44035600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:44034800-44035600	Enhancers	HUVEC	blood vessel
42	chr6:44034800-44035800	Enhancers	Fetal Lung	lung
43	chr6:44034800-44036000	Enhancers	NHLF	lung
44	chr6:44034800-44036600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:44034800-44036600	Enhancers	Placenta	Placenta
46	chr6:44034800-44036600	Bivalent Enhancer	HepG2	liver
47	chr6:44034800-44036800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr6:44035000-44035400	Enhancers	NHEK	skin
49	chr6:44035000-44035600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:44035000-44035600	Enhancers	Pancreas	Pancrea

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