Variant report

Variant	rs62403186
Chromosome Location	chr6:44037330-44037331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43943185..43945060-chr6:44037055..44039545,2	K562	blood:
2	chr6:44030222..44032797-chr6:44035126..44037771,3	MCF-7	breast:
3	chr6:43730164..43744120-chr6:44034600..44052665,50	K562	blood:
4	chr6:43596893..43598722-chr6:44035498..44037676,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRPL14-4	chr6:44036825-44041054	NONHSAT112941

Variant related genes	Relation type
ENSG00000272114	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000124688	Chromatin interaction
ENSG00000172432	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13210320	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2236061	0.97[EUR][1000 genomes]
rs3734696	1.00[AFR][1000 genomes]
rs62401765	1.00[AFR][1000 genomes]
rs9349270	0.96[EUR][1000 genomes]
rs9381286	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9381287	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44022400-44040400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44030000-44040800	Weak transcription	Gastric	stomach
3	chr6:44030200-44040400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:44031200-44040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:44033200-44040000	Enhancers	K562	blood
6	chr6:44033200-44040400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:44033400-44039400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:44033400-44040200	Weak transcription	Colonic Mucosa	Colon
9	chr6:44033600-44039400	Weak transcription	Fetal Heart	heart
10	chr6:44033800-44040200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:44034000-44039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:44034000-44040000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:44034000-44040200	Weak transcription	Lung	lung
14	chr6:44034200-44038200	Enhancers	Hela-S3	cervix
15	chr6:44034400-44039200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:44034600-44040400	Weak transcription	Spleen	Spleen
17	chr6:44035200-44039000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:44035200-44040000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:44035400-44039400	Weak transcription	NHEK	skin
20	chr6:44035400-44040400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:44035600-44039000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:44035600-44039600	Weak transcription	HSMMtube	muscle
23	chr6:44035600-44040200	Weak transcription	Pancreas	Pancrea
24	chr6:44035600-44040400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:44035800-44039200	Weak transcription	Fetal Lung	lung
26	chr6:44035800-44039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:44035800-44040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:44035800-44040400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:44036000-44039000	Weak transcription	NHLF	lung
30	chr6:44036000-44039000	Weak transcription	Osteobl	bone
31	chr6:44036000-44039800	Weak transcription	GM12878-XiMat	blood
32	chr6:44036000-44040200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:44036000-44040200	Weak transcription	Right Ventricle	heart
34	chr6:44036200-44038800	Weak transcription	HMEC	breast
35	chr6:44036400-44038000	Weak transcription	HSMM	muscle
36	chr6:44036400-44038800	Weak transcription	NHDF-Ad	bronchial
37	chr6:44036600-44038200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:44036600-44038200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:44036600-44038200	Enhancers	HepG2	liver
40	chr6:44036600-44039000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:44036600-44039000	Weak transcription	NH-A	brain
42	chr6:44036600-44039200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:44036600-44040000	Weak transcription	Fetal Stomach	stomach
44	chr6:44036600-44040000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:44036600-44040200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:44036600-44040200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:44036600-44040200	Weak transcription	Esophagus	oesophagus
48	chr6:44036600-44040200	Weak transcription	Placenta	Placenta
49	chr6:44036600-44040400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:44036600-44040400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links