Variant report

Variant	rs13210531
Chromosome Location	chr6:14093155-14093156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10949225	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529514	0.81[ASN][1000 genomes]
rs12530474	0.93[ASN][1000 genomes]
rs72836542	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14089400-14093400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:14089600-14095000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:14089600-14095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:14090200-14093600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:14090200-14093800	Weak transcription	Spleen	Spleen
7	chr6:14091200-14093200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:14091200-14094600	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:14091200-14095200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:14091400-14099800	Enhancers	Primary B cells from cord blood	blood
11	chr6:14092400-14101200	Weak transcription	Adipose Nuclei	Adipose
12	chr6:14092800-14094400	Enhancers	Brain Hippocampus Middle	brain
13	chr6:14093000-14093200	Weak transcription	HMEC	breast
14	chr6:14093000-14095600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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