Variant report

Variant	rs12530474
Chromosome Location	chr6:14104590-14104591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10949225	0.92[ASN][1000 genomes]
rs11753410	0.82[ASN][1000 genomes]
rs12530098	0.83[ASN][1000 genomes]
rs13210531	0.93[ASN][1000 genomes]
rs2235369	0.83[ASN][1000 genomes]
rs6926225	0.82[ASN][1000 genomes]
rs9464657	0.82[ASN][1000 genomes]
rs9476499	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14099800-14106800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:14103400-14106200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:14103600-14105000	Weak transcription	GM12878-XiMat	blood
4	chr6:14104400-14105200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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