Variant report

Variant	rs9464657
Chromosome Location	chr6:14106221-14106222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1028323	0.80[ASN][1000 genomes]
rs11753410	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190061	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12529514	0.94[ASN][1000 genomes]
rs12530098	0.99[ASN][1000 genomes]
rs12530474	0.82[ASN][1000 genomes]
rs16874672	0.81[ASN][1000 genomes]
rs16874680	0.82[ASN][1000 genomes]
rs2235369	0.99[ASN][1000 genomes]
rs6926225	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929821	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936285	0.94[ASN][1000 genomes]
rs72836542	0.93[ASN][1000 genomes]
rs853357	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9464657	CD83	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14099800-14106800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:14106000-14107000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:14106200-14109000	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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