Variant report

Variant	rs16874680
Chromosome Location	chr6:14089043-14089044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1028323	0.94[ASN][1000 genomes]
rs11753410	0.82[ASN][1000 genomes]
rs12529514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12530098	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16874672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2235369	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs6926225	0.82[ASN][1000 genomes]
rs6929821	0.84[CHB][hapmap]
rs72836542	0.88[ASN][1000 genomes]
rs853357	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs9464657	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14086400-14091400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:14088000-14089400	Enhancers	HSMMtube	muscle
3	chr6:14088200-14089200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:14088400-14089200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:14088400-14089200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:14088400-14089400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:14088400-14089600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:14088400-14089600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:14088400-14089800	Enhancers	Hela-S3	cervix
10	chr6:14088600-14089400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:14088600-14089600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:14088600-14089600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:14088800-14089400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:14088800-14089400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:14088800-14089600	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:14088800-14089600	Enhancers	NHEK	skin
18	chr6:14088800-14090200	Enhancers	HMEC	breast
19	chr6:14089000-14089200	Enhancers	Esophagus	oesophagus
20	chr6:14089000-14089400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:14089000-14089400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:14089000-14089400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:14089000-14089400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:14089000-14089400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:14089000-14089400	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:14089000-14089400	Enhancers	A549	lung
27	chr6:14089000-14089600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:14089000-14089600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:14089000-14090200	Enhancers	Placenta	Placenta

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