Variant report

Variant	rs853357
Chromosome Location	chr6:14129630-14129631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14129434..14130330-chr6:14144987..14145814,2	MCF-7	breast:
2	chr6:14129448..14130035-chr6:14144581..14145471,3	MCF-7	breast:
3	chr6:14124100..14125656-chr6:14128035..14130446,2	MCF-7	breast:
4	chr6:14129400..14130327-chr6:14661513..14662249,2	K562	blood:
5	chr6:14128098..14129970-chr6:14135214..14136716,2	K562	blood:
6	chr6:14109682..14112094-chr6:14128047..14131236,3	K562	blood:
7	chr6:14129438..14130388-chr6:14144577..14145483,5	K562	blood:
8	chr6:14128990..14131969-chr6:14144322..14146425,2	K562	blood:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11753410	0.94[ASN][1000 genomes]
rs12190061	0.97[ASN][1000 genomes]
rs12529514	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12530098	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2235369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926225	0.94[ASN][1000 genomes]
rs6929821	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6936285	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72836542	0.88[ASN][1000 genomes]
rs9464657	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14118600-14134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:14118800-14130000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:14119000-14131600	Weak transcription	Lung	lung
4	chr6:14119000-14134600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:14119000-14144800	Weak transcription	Left Ventricle	heart
6	chr6:14119400-14130400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:14119400-14131600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:14119400-14133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:14119400-14135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:14119600-14134600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:14119800-14134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:14120800-14134800	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr6:14121000-14130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:14122600-14131400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:14122600-14134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:14122800-14130000	Weak transcription	Spleen	Spleen
17	chr6:14124600-14131400	Genic enhancers	Primary B cells from cord blood	blood
18	chr6:14124600-14132800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:14124600-14141400	Weak transcription	Brain Substantia Nigra	brain
20	chr6:14124800-14129800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:14124800-14131600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:14125000-14132200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:14126200-14131200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:14126400-14137000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:14126800-14129800	Weak transcription	Primary T cells from cord blood	blood
26	chr6:14127200-14130400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:14127400-14131600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:14127600-14130600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:14127800-14130200	Enhancers	Colon Smooth Muscle	Colon
30	chr6:14127800-14130400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:14127800-14130400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:14127800-14130400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:14127800-14130600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:14128000-14130200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr6:14128000-14130200	Enhancers	Fetal Stomach	stomach
36	chr6:14128000-14130600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:14128000-14130600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr6:14128000-14131600	Enhancers	Fetal Lung	lung
39	chr6:14128000-14135400	Weak transcription	Fetal Brain Female	brain
40	chr6:14128200-14130400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:14128200-14131200	Enhancers	K562	blood
42	chr6:14128400-14130400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:14128400-14130800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:14128400-14131000	Enhancers	Fetal Thymus	thymus
45	chr6:14128400-14131200	Enhancers	Fetal Muscle Leg	muscle
46	chr6:14128600-14129800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:14128600-14130400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:14128600-14132000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:14128600-14132800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:14128600-14134400	Weak transcription	Rectal Mucosa Donor 29	rectum

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