Variant report

Variant	rs11753410
Chromosome Location	chr6:14107574-14107575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1028323	0.80[ASN][1000 genomes]
rs12190061	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12529514	0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[ASN][1000 genomes]
rs12530098	0.99[ASN][1000 genomes]
rs12530474	0.82[ASN][1000 genomes]
rs16874672	0.81[ASN][1000 genomes]
rs16874680	0.82[ASN][1000 genomes]
rs2235369	1.00[CHB][hapmap];1.00[CHD][hapmap];0.99[ASN][1000 genomes]
rs6926225	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929821	0.89[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936285	0.94[ASN][1000 genomes]
rs72836542	0.93[ASN][1000 genomes]
rs853357	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9464657	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11753410	CD83	cis	Muscle Skeletal	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14106200-14109000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14106600-14108200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr6:14106800-14109200	Enhancers	Primary B cells from cord blood	blood
4	chr6:14107000-14107600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:14107000-14107800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr6:14107000-14107800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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