Variant report

Variant	rs13211138
Chromosome Location	chr6:144818640-144818641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:73159864..73160569-chr6:144817836..144818836,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13205040	0.80[EUR][1000 genomes]
rs34095417	0.80[ASN][1000 genomes]
rs35866755	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146297	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4401687	0.92[ASN][1000 genomes]
rs66905872	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144788800-144821600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144789400-144822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:144792400-144823800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr6:144795600-144822600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:144795800-144849800	Weak transcription	HMEC	breast
9	chr6:144797400-144822000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:144803200-144826800	Weak transcription	Fetal Brain Male	brain
12	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:144803800-144821800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:144804200-144821400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:144805000-144821200	Strong transcription	Fetal Thymus	thymus
16	chr6:144807200-144828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:144807400-144820200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:144808400-144822600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:144812000-144823000	Weak transcription	Small Intestine	intestine
21	chr6:144812200-144820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:144812400-144825400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:144812400-144835000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
27	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:144812600-144849600	Weak transcription	NH-A	brain
29	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:144813400-144825600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
32	chr6:144813600-144819000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:144813600-144819800	Weak transcription	Lung	lung
34	chr6:144813600-144820400	Weak transcription	Esophagus	oesophagus
35	chr6:144813600-144820400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:144813600-144824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:144813600-144828800	Weak transcription	Right Ventricle	heart
38	chr6:144813600-144834800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:144814600-144819800	Weak transcription	Pancreas	Pancrea
40	chr6:144814600-144820000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:144814600-144820200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:144814600-144820200	Weak transcription	NHDF-Ad	bronchial
43	chr6:144814600-144820400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:144814600-144822600	Strong transcription	Adipose Nuclei	Adipose
45	chr6:144814800-144820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:144814800-144820200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:144814800-144820200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:144814800-144834000	Weak transcription	NHLF	lung
49	chr6:144815000-144820000	Weak transcription	Placenta	Placenta
50	chr6:144815000-144820200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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