Variant report

Variant	rs34095417
Chromosome Location	chr6:144854537-144854538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144848573..144853071-chr6:144854031..144858388,6	K562	blood:
2	chr6:144854161..144860088-chr6:144861624..144865343,8	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1005974	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1016235	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11155357	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155361	0.83[EUR][1000 genomes]
rs12201476	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204372	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214126	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13191597	0.80[EUR][1000 genomes]
rs13193448	0.83[ASN][1000 genomes]
rs13195928	0.84[EUR][1000 genomes]
rs13198102	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13201946	0.83[ASN][1000 genomes]
rs13203387	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13205040	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13207331	0.90[ASN][1000 genomes]
rs13211138	0.80[ASN][1000 genomes]
rs1534437	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1554813	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554814	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1590055	0.83[ASN][1000 genomes]
rs17793810	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1830271	0.83[ASN][1000 genomes]
rs1918744	0.83[ASN][1000 genomes]
rs1918745	0.80[EUR][1000 genomes]
rs2103276	0.81[EUR][1000 genomes]
rs2178128	0.83[ASN][1000 genomes]
rs34504312	0.83[ASN][1000 genomes]
rs34571592	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35866755	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35904953	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3811099	0.99[ASN][1000 genomes]
rs3924656	0.83[ASN][1000 genomes]
rs3924657	0.83[ASN][1000 genomes]
rs4052725	0.82[EUR][1000 genomes]
rs4075776	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146297	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4401687	0.86[ASN][1000 genomes]
rs4582403	0.83[EUR][1000 genomes]
rs56158631	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66905872	0.90[ASN][1000 genomes]
rs6908795	0.81[EUR][1000 genomes]
rs6915390	0.83[EUR][1000 genomes]
rs6918394	0.83[EUR][1000 genomes]
rs6919793	0.80[EUR][1000 genomes]
rs6920388	0.80[EUR][1000 genomes]
rs6924812	0.80[EUR][1000 genomes]
rs6938409	0.81[EUR][1000 genomes]
rs6938455	0.83[EUR][1000 genomes]
rs6938776	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73001731	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73005509	0.83[ASN][1000 genomes]
rs7740593	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376829	0.83[ASN][1000 genomes]
rs9390179	0.83[ASN][1000 genomes]
rs9403565	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403566	0.83[ASN][1000 genomes]
rs952051	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
4	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
6	chr6:144815200-144881000	Weak transcription	NHEK	skin
7	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:144827200-144857200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:144829800-144863800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
12	chr6:144831800-144857000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:144832200-144856800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:144832400-144862200	Weak transcription	Small Intestine	intestine
15	chr6:144833800-144857000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:144833800-144857200	Strong transcription	Primary T cells from cord blood	blood
17	chr6:144833800-144868200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:144835000-144856400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:144837200-144880800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:144839600-144855400	Weak transcription	HSMMtube	muscle
21	chr6:144843000-144854800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:144843200-144855800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:144843600-144857200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:144844400-144861400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:144844400-144870000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:144844600-144860800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:144847000-144855400	Strong transcription	Adipose Nuclei	Adipose
28	chr6:144847200-144854600	Strong transcription	Fetal Thymus	thymus
29	chr6:144847200-144856000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:144847200-144857000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:144847600-144856400	Strong transcription	Liver	Liver
32	chr6:144847800-144857000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:144847800-144857200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:144848000-144856400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:144849000-144856000	Strong transcription	HepG2	liver
36	chr6:144849600-144855000	Strong transcription	Fetal Intestine Large	intestine
37	chr6:144849600-144856000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:144850000-144864200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:144850000-144864200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:144850200-144858600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:144850200-144877400	Weak transcription	HMEC	breast
42	chr6:144850400-144856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:144850400-144856200	Strong transcription	Dnd41	blood
44	chr6:144850400-144857000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:144850400-144864000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:144850400-144864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:144850400-144865600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:144850400-144866000	Weak transcription	Hela-S3	cervix
49	chr6:144850400-144903200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:144850400-144903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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