Variant report

Variant	rs6938455
Chromosome Location	chr6:144917064-144917065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144862779..144865501-chr6:144916881..144920128,3	K562	blood:
2	chr6:144912593..144916364-chr6:144916671..144919134,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1005974	0.83[EUR][1000 genomes]
rs1016235	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11155357	0.83[EUR][1000 genomes]
rs11155361	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201476	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12204372	0.83[EUR][1000 genomes]
rs12214126	0.83[EUR][1000 genomes]
rs13191597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193448	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13195928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198102	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13201946	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13203229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203387	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13205040	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1534437	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1554813	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1554814	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1554816	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1590055	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17793810	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1830271	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1918744	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1918745	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2178128	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34053805	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34095417	0.83[EUR][1000 genomes]
rs34504312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34571592	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35161160	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35524567	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866755	0.81[EUR][1000 genomes]
rs35904953	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3811099	0.93[CEU][hapmap]
rs3924656	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3924657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4052725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075776	0.83[EUR][1000 genomes]
rs4146297	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4438980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56039703	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67767204	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6919793	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924812	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001731	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73005504	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005509	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73005511	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740593	0.83[EUR][1000 genomes]
rs9376829	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9376830	0.80[ASN][1000 genomes]
rs9390177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390179	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9390180	0.91[EUR][1000 genomes]
rs9403565	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9403566	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497023	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs952050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952051	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
4	chr6:144899800-144917400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:144904600-144921600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:144904600-144923600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
10	chr6:144904800-144921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:144904800-144929000	Weak transcription	Left Ventricle	heart
12	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:144905400-144923200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:144905400-144923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:144905800-144922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:144906400-144918600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:144906400-144922800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:144908600-144922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:144908600-144922800	Weak transcription	Osteobl	bone
20	chr6:144908800-144917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
22	chr6:144909400-144917200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:144909400-144931000	Weak transcription	Aorta	Aorta
24	chr6:144910400-144924600	Weak transcription	Fetal Kidney	kidney
25	chr6:144912600-144920800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:144912600-144923600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:144912800-144922600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:144913200-144921400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:144914600-144921400	Weak transcription	Adipose Nuclei	Adipose
30	chr6:144914800-144917600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:144914800-144918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:144914800-144918400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:144914800-144919400	Weak transcription	Dnd41	blood
34	chr6:144914800-144921200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:144914800-144921400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:144914800-144921400	Weak transcription	Primary T cells from cord blood	blood
37	chr6:144914800-144921400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:144914800-144921400	Weak transcription	Liver	Liver
39	chr6:144914800-144921600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:144914800-144921600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:144914800-144921600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:144914800-144921800	Weak transcription	Fetal Lung	lung
43	chr6:144914800-144921800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:144914800-144922800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:144914800-144923200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:144914800-144929400	Weak transcription	Fetal Thymus	thymus
47	chr6:144914800-144937800	Weak transcription	HSMM	muscle
48	chr6:144914800-144960000	Weak transcription	Lung	lung
49	chr6:144915000-144920600	Weak transcription	HepG2	liver
50	chr6:144915000-144921800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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