Variant report

Variant	rs6938776
Chromosome Location	chr6:144915196-144915197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144912593..144916364-chr6:144916671..144919134,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1005974	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1016235	0.83[EUR][1000 genomes]
rs11155357	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11155361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12201476	0.83[EUR][1000 genomes]
rs12204372	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12214126	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13191597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13193448	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195928	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13198102	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201946	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203229	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13203387	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13205040	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13207026	0.81[ASN][1000 genomes]
rs13218121	0.81[ASN][1000 genomes]
rs1534437	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1554813	0.83[EUR][1000 genomes]
rs1554814	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1590055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17793810	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1830271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918744	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918745	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1918746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1918747	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1918748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2178128	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34053805	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34095417	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34504312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34571592	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35161160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35524567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35866755	0.81[EUR][1000 genomes]
rs35904953	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811099	0.82[ASN][1000 genomes]
rs3924656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4052725	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4075776	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4146297	0.86[EUR][1000 genomes]
rs4438980	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4582403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039703	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56158631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67767204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6908795	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6915390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6920388	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6924812	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6938409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6938455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001731	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73005504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73005509	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740593	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376829	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390177	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390179	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390180	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403569	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403570	0.81[ASN][1000 genomes]
rs9497023	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs952050	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs952051	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
4	chr6:144899800-144917400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:144900000-144915400	Weak transcription	Pancreas	Pancrea
6	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:144904600-144915800	Weak transcription	Psoas Muscle	Psoas
9	chr6:144904600-144915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:144904600-144916400	Weak transcription	Fetal Stomach	stomach
11	chr6:144904600-144921600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:144904600-144923600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
14	chr6:144904800-144915800	Weak transcription	NH-A	brain
15	chr6:144904800-144921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:144904800-144929000	Weak transcription	Left Ventricle	heart
17	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:144905400-144923200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:144905400-144923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:144905800-144915400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:144905800-144922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:144906400-144918600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:144906400-144922800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:144908600-144922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:144908600-144922800	Weak transcription	Osteobl	bone
26	chr6:144908800-144917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
28	chr6:144909200-144915200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:144909200-144915800	Weak transcription	Fetal Intestine Large	intestine
30	chr6:144909400-144917200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:144909400-144931000	Weak transcription	Aorta	Aorta
32	chr6:144909800-144915200	Weak transcription	Fetal Heart	heart
33	chr6:144910400-144924600	Weak transcription	Fetal Kidney	kidney
34	chr6:144912200-144916000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:144912600-144920800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:144912600-144923600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:144912800-144922600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:144913200-144915400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:144913200-144921400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr6:144913600-144915200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:144913800-144915200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:144914200-144916800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:144914600-144921400	Weak transcription	Adipose Nuclei	Adipose
44	chr6:144914800-144915200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:144914800-144915600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:144914800-144916400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:144914800-144916800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:144914800-144917000	Weak transcription	Primary B cells from cord blood	blood
49	chr6:144914800-144917600	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr6:144914800-144918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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