Variant report

Variant	rs17793810
Chromosome Location	chr6:144904655-144904656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1005974	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1016235	0.88[EUR][1000 genomes]
rs10434891	0.82[JPT][hapmap]
rs11155357	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155361	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12196553	0.82[JPT][hapmap]
rs12201476	0.88[EUR][1000 genomes]
rs12204372	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214126	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13191597	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13193448	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13195928	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13198102	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13201946	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13203229	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13203387	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13205040	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13207331	0.81[AFR][1000 genomes]
rs1534437	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1554813	0.88[EUR][1000 genomes]
rs1554814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1590055	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1830271	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1918744	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1918745	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1918746	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1918747	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1918748	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2178128	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34053805	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34095417	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34504312	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34571592	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35161160	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35524567	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35866755	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35904953	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3811099	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3924656	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3924657	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4052725	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4075776	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4401687	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4438980	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4582403	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56039703	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56158631	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66905872	0.80[ASN][1000 genomes]
rs67767204	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6908795	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6915390	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6918394	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6919793	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6920388	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6924812	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6938409	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6938455	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6938776	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73001731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73005504	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73005509	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73005511	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7739143	0.82[JPT][hapmap]
rs7740593	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7753246	0.82[JPT][hapmap]
rs9376829	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390177	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9390179	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390180	0.81[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403565	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403566	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403569	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403570	1.00[YRI][hapmap]
rs9497023	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs952050	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs952051	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144898600-144912800	Weak transcription	Gastric	stomach
4	chr6:144899600-144909000	Weak transcription	Aorta	Aorta
5	chr6:144899600-144913800	Weak transcription	Lung	lung
6	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
7	chr6:144899800-144914400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:144899800-144914400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:144899800-144917400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:144900000-144915400	Weak transcription	Pancreas	Pancrea
11	chr6:144902400-144908400	Weak transcription	HUVEC	blood vessel
12	chr6:144903000-144904800	Enhancers	Liver	Liver
13	chr6:144903000-144905000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:144903200-144904800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:144903400-144905000	Flanking Active TSS	NHDF-Ad	bronchial
16	chr6:144903600-144904800	Strong transcription	HepG2	liver
17	chr6:144903800-144904800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:144903800-144904800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:144903800-144904800	Enhancers	Fetal Lung	lung
20	chr6:144903800-144905000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:144903800-144905000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr6:144903800-144905000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr6:144903800-144905000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:144903800-144905200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:144904000-144904800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:144904000-144904800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:144904000-144904800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:144904000-144904800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr6:144904000-144904800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr6:144904000-144904800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr6:144904000-144904800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr6:144904000-144904800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:144904000-144904800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:144904000-144904800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:144904000-144904800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:144904000-144904800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:144904000-144904800	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr6:144904000-144904800	Active TSS	Brain Germinal Matrix	brain
39	chr6:144904000-144904800	Enhancers	Left Ventricle	heart
40	chr6:144904000-144904800	Flanking Active TSS	NHLF	lung
41	chr6:144904000-144904800	Flanking Active TSS	Osteobl	bone
42	chr6:144904000-144905000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr6:144904000-144905000	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr6:144904000-144905000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:144904000-144905200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr6:144904000-144905200	Flanking Active TSS	GM12878-XiMat	blood
47	chr6:144904000-144905200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr6:144904200-144904800	Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:144904200-144904800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:144904200-144904800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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