Variant report

Variant	rs9497023
Chromosome Location	chr6:144945610-144945611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1005974	0.93[JPT][hapmap]
rs10434891	0.92[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11155361	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs13191597	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13193448	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13195928	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13198102	0.86[EUR][1000 genomes]
rs13201946	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203229	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13203387	0.85[EUR][1000 genomes]
rs13205040	0.83[EUR][1000 genomes]
rs13207026	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13218121	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1534437	0.85[EUR][1000 genomes]
rs1554814	0.85[EUR][1000 genomes]
rs1590055	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17793810	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs1830271	1.00[CEU][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918745	0.94[EUR][1000 genomes]
rs1918746	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1918747	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1918748	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2178128	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34053805	0.94[EUR][1000 genomes]
rs34504312	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34571592	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35161160	0.94[EUR][1000 genomes]
rs35524567	0.95[EUR][1000 genomes]
rs35904953	0.85[EUR][1000 genomes]
rs3811099	0.94[CEU][hapmap];0.94[JPT][hapmap]
rs3924656	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924657	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4052725	0.90[EUR][1000 genomes]
rs4146297	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs4401687	0.87[JPT][hapmap]
rs4438980	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4568467	0.87[ASN][1000 genomes]
rs4582403	0.91[EUR][1000 genomes]
rs56039703	0.94[EUR][1000 genomes]
rs56158631	0.85[EUR][1000 genomes]
rs56185703	0.86[ASN][1000 genomes]
rs67767204	0.94[EUR][1000 genomes]
rs6908795	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6915390	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6918394	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6919793	0.94[EUR][1000 genomes]
rs6920388	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6924812	0.94[EUR][1000 genomes]
rs6938409	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6938455	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6938776	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73001731	0.86[EUR][1000 genomes]
rs73005504	0.94[EUR][1000 genomes]
rs73005509	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73005511	0.94[EUR][1000 genomes]
rs7753246	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9376829	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376830	0.85[CHB][hapmap]
rs9390177	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9390179	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390180	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390181	0.88[ASN][1000 genomes]
rs9390185	0.82[JPT][hapmap]
rs9403565	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403566	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403569	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9403570	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403571	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs952050	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs952051	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
2	chr6:144914800-144960000	Weak transcription	Lung	lung
3	chr6:144929600-144955200	Weak transcription	HepG2	liver
4	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:144939200-144945800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:144940600-144945800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:144941200-144947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
17	chr6:144943000-144947600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:144943600-144953800	Weak transcription	Gastric	stomach
19	chr6:144944200-144946200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:144944200-144951200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:144944400-144945800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:144945400-144946000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:144945600-144945800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:144945600-144945800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:144945600-144946000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:144945600-144946000	Enhancers	Left Ventricle	heart
27	chr6:144945600-144946000	Enhancers	Pancreas	Pancrea
28	chr6:144945600-144946400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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