Variant report

Variant	rs10434891
Chromosome Location	chr6:144958708-144958709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1005974	0.82[JPT][hapmap]
rs12528683	0.83[ASN][1000 genomes]
rs12663692	0.84[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs13193448	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs13207026	0.96[ASN][1000 genomes]
rs13218121	0.96[ASN][1000 genomes]
rs17793810	0.82[JPT][hapmap]
rs1830271	0.80[JPT][hapmap]
rs1918744	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs2178128	0.88[JPT][hapmap]
rs3811099	0.82[JPT][hapmap]
rs3924656	0.88[JPT][hapmap]
rs3924657	0.88[JPT][hapmap]
rs4146297	0.82[JPT][hapmap]
rs4568467	0.97[ASN][1000 genomes]
rs56185703	0.96[ASN][1000 genomes]
rs7742445	0.83[JPT][hapmap]
rs7753246	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376829	0.88[JPT][hapmap]
rs9376830	0.84[CHB][hapmap]
rs9390180	0.92[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9390181	0.92[ASN][1000 genomes]
rs9390185	0.84[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs9390186	0.84[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs9403565	0.88[JPT][hapmap]
rs9403570	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403571	0.94[ASN][1000 genomes]
rs9403575	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9497023	0.92[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs952051	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144914800-144960000	Weak transcription	Lung	lung
2	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:144946000-144961000	Weak transcription	Left Ventricle	heart
6	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
9	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:144949000-144965200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
12	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
16	chr6:144951800-144977600	Weak transcription	Dnd41	blood
17	chr6:144952400-144959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:144953000-144960200	Weak transcription	Fetal Heart	heart
20	chr6:144955400-144961000	Weak transcription	Fetal Lung	lung
21	chr6:144955600-144961000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:144956600-144965000	Weak transcription	HepG2	liver
23	chr6:144957000-144966600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:144957800-144959400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:144958000-144961200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:144958200-144958800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:144958200-144959000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:144958200-144959000	Enhancers	Esophagus	oesophagus
29	chr6:144958200-144959200	Enhancers	Liver	Liver
30	chr6:144958200-144959600	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr6:144958400-144962400	Weak transcription	Ovary	ovary
32	chr6:144958400-144964800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:144958600-144959000	Enhancers	NHEK	skin
34	chr6:144958600-144959200	Enhancers	Adipose Nuclei	Adipose

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