Variant report

Variant	rs9403575
Chromosome Location	chr6:144992240-144992241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10434891	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs12528683	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12663692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328596	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568467	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61336829	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753246	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9390185	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9399487	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403570	0.82[JPT][hapmap]
rs9403577	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
2	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
3	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144982600-144996200	Weak transcription	HSMM	muscle
5	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
6	chr6:144983000-144992600	Weak transcription	HSMMtube	muscle
7	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
8	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
11	chr6:144988600-144992400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:144988600-144995800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:144989400-144992600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:144989400-144992800	Weak transcription	Left Ventricle	heart
15	chr6:144989800-144992800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:144990200-144995600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:144991000-144996200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:144992000-144992600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr6:144992200-144992400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:144992200-144993800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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