Variant report

Variant	rs9403570
Chromosome Location	chr6:144948196-144948197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1005974	0.82[JPT][hapmap]
rs10434891	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12528683	0.81[ASN][1000 genomes]
rs12663692	0.81[JPT][hapmap]
rs13191597	0.81[EUR][1000 genomes]
rs13193448	0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13201946	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13203229	0.81[EUR][1000 genomes]
rs13207026	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590055	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17793810	1.00[YRI][hapmap]
rs1830271	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1918744	0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1918745	0.81[EUR][1000 genomes]
rs1918746	0.82[EUR][1000 genomes]
rs1918747	0.82[EUR][1000 genomes]
rs1918748	0.82[EUR][1000 genomes]
rs2178128	0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34053805	0.81[EUR][1000 genomes]
rs34504312	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34571592	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35161160	0.81[EUR][1000 genomes]
rs35524567	0.82[EUR][1000 genomes]
rs3924656	0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924657	0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4146297	0.82[JPT][hapmap]
rs4438980	0.82[EUR][1000 genomes]
rs4568467	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56039703	0.81[EUR][1000 genomes]
rs56185703	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67767204	0.81[EUR][1000 genomes]
rs6908795	0.80[EUR][1000 genomes]
rs6919793	0.81[EUR][1000 genomes]
rs6920388	0.81[EUR][1000 genomes]
rs6924812	0.81[EUR][1000 genomes]
rs6938776	0.81[ASN][1000 genomes]
rs73005504	0.81[EUR][1000 genomes]
rs73005509	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73005511	0.81[EUR][1000 genomes]
rs7742445	0.83[JPT][hapmap]
rs7753246	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376829	0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376830	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes]
rs9390177	0.81[EUR][1000 genomes]
rs9390179	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390180	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390181	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390185	0.94[JPT][hapmap]
rs9390186	0.81[JPT][hapmap]
rs9403565	0.82[JPT][hapmap]
rs9403566	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403569	0.81[EUR][1000 genomes]
rs9403571	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403575	0.82[JPT][hapmap]
rs9497023	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952050	0.81[EUR][1000 genomes]
rs952051	0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144914800-144960000	Weak transcription	Lung	lung
2	chr6:144929600-144955200	Weak transcription	HepG2	liver
3	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
13	chr6:144943600-144953800	Weak transcription	Gastric	stomach
14	chr6:144944200-144951200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:144946000-144949800	Weak transcription	Pancreas	Pancrea
16	chr6:144946000-144952200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:144946000-144961000	Weak transcription	Left Ventricle	heart
18	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
21	chr6:144947400-144949000	Enhancers	HUVEC	blood vessel
22	chr6:144947600-144948400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:144947600-144949400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:144947600-144949600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:144948000-144956800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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