Variant report

Variant	rs13212343
Chromosome Location	chr6:77993179-77993180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13193803	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196365	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196766	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200984	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204564	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208046	0.85[EUR][1000 genomes]
rs13208313	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209939	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214068	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217189	0.81[EUR][1000 genomes]
rs13218318	1.00[ASN][1000 genomes]
rs1361762	0.85[EUR][1000 genomes]
rs1361845	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418589	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935723	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226183	1.00[JPT][hapmap]
rs34016419	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563689	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920316	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6925279	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537194	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537195	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772083	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774869	1.00[ASN][1000 genomes]
rs7775062	1.00[ASN][1000 genomes]
rs9443397	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448053	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77990800-78000400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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