Variant report

Variant	rs1418589
Chromosome Location	chr6:77980341-77980342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13193803	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196365	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196766	1.00[ASN][1000 genomes]
rs13200984	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204564	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208046	0.82[EUR][1000 genomes]
rs13208313	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209939	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212343	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214068	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218318	1.00[ASN][1000 genomes]
rs1361762	0.82[EUR][1000 genomes]
rs1361845	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935723	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935736	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34016419	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563689	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6925279	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537194	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71537195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772083	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774869	1.00[ASN][1000 genomes]
rs7775062	1.00[ASN][1000 genomes]
rs9443397	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448053	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77969800-77982400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:77970600-77984400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:77971600-77983600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:77973600-77984200	Weak transcription	Ovary	ovary
5	chr6:77975000-77980400	Weak transcription	Pancreas	Pancrea
6	chr6:77975200-77983000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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