The 2.0 version of rSNPBase

Variant report

Variant rs13215099
Chromosome Location chr6:143490659-143490660
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr6:143452000-143497000 Weak transcription Fetal Stomach stomach
4 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
5 chr6:143453000-143508600 Weak transcription Fetal Lung lung
6 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr6:143458800-143529200 Weak transcription Primary T cells from cord blood blood
8 chr6:143459600-143505400 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr6:143462200-143497800 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr6:143463000-143508400 Weak transcription Stomach Smooth Muscle stomach
11 chr6:143477000-143501200 Weak transcription Right Atrium heart
12 chr6:143479600-143496000 Weak transcription Brain Hippocampus Middle brain
13 chr6:143479600-143497200 Weak transcription Esophagus oesophagus
14 chr6:143479600-143499400 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr6:143479600-143508600 Weak transcription Colon Smooth Muscle Colon
16 chr6:143479600-143534600 Weak transcription Gastric stomach
17 chr6:143480200-143501200 Weak transcription Brain Angular Gyrus brain
18 chr6:143480400-143497200 Weak transcription Lung lung
19 chr6:143481800-143497000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr6:143481800-143497600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr6:143482200-143497200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr6:143482400-143511200 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr6:143484200-143500000 Weak transcription Fetal Heart heart
24 chr6:143484400-143494200 Weak transcription Fetal Intestine Small intestine
25 chr6:143484400-143519800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr6:143485200-143497000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr6:143485200-143509400 Weak transcription H1 Cell Line embryonic stem cell
28 chr6:143485800-143490800 Strong transcription Liver Liver
29 chr6:143485800-143491200 Strong transcription HepG2 liver
30 chr6:143486000-143492000 Weak transcription Psoas Muscle Psoas
31 chr6:143486000-143501400 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr6:143486000-143510400 Weak transcription Brain Anterior Caudate brain
33 chr6:143487000-143497000 Weak transcription Aorta Aorta
34 chr6:143487000-143516600 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr6:143487200-143492800 Weak transcription Primary hematopoietic stem cells blood
36 chr6:143487200-143506400 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr6:143487600-143496200 Weak transcription Fetal Intestine Large intestine
38 chr6:143487600-143497200 Weak transcription Osteobl bone
39 chr6:143487600-143508600 Weak transcription Ovary ovary
40 chr6:143487600-143518000 Weak transcription Fetal Kidney kidney
41 chr6:143487800-143492800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr6:143487800-143495600 Weak transcription Adipose Nuclei Adipose
43 chr6:143487800-143495600 Weak transcription Duodenum Mucosa Duodenum
44 chr6:143487800-143498800 Weak transcription Left Ventricle heart
45 chr6:143488200-143492800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr6:143488400-143492600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr6:143488400-143510400 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr6:143488600-143492800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr6:143488600-143497000 Weak transcription HMEC breast
50 chr6:143488600-143506400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015