Variant report

Variant	rs199257
Chromosome Location	chr6:143329652-143329653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12190352	1.00[JPT][hapmap]
rs12197240	1.00[JPT][hapmap]
rs12203103	1.00[JPT][hapmap]
rs12216122	1.00[JPT][hapmap]
rs13215099	1.00[ASN][1000 genomes]
rs175219	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199240	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs199241	1.00[ASN][1000 genomes]
rs200137	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200143	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs200144	1.00[ASN][1000 genomes]
rs200145	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs200148	1.00[JPT][hapmap]
rs62429601	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1024486	chr6:143324036-143346704	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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