Variant report

Variant	rs13215768
Chromosome Location	chr6:4673713-4673714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4671964..4676370-chr6:4676405..4678296,5	K562	blood:
2	chr6:4668064..4670933-chr6:4672620..4676191,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1040542	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1040543	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195286	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2073041	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076518	0.95[EUR][1000 genomes]
rs372218	0.85[ASN][1000 genomes]
rs423699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440298	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs451971	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960015	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761180	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761181	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9378898	0.95[EUR][1000 genomes]
rs9378899	0.95[EUR][1000 genomes]
rs9378900	0.95[EUR][1000 genomes]
rs9378901	0.95[EUR][1000 genomes]
rs9378902	0.95[EUR][1000 genomes]
rs9392060	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9392621	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504195	0.95[EUR][1000 genomes]
rs9504197	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
2	chr6:4668200-4675000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:4669000-4695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:4669400-4677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:4672200-4673800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:4672400-4674000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:4672600-4675000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:4672600-4675800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:4672800-4674000	Enhancers	Adipose Nuclei	Adipose
10	chr6:4672800-4674200	Enhancers	Placenta	Placenta
11	chr6:4673000-4675800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:4673200-4673800	Enhancers	Ovary	ovary
13	chr6:4673200-4674000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:4673200-4675600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:4673400-4673800	Enhancers	Brain Hippocampus Middle	brain
16	chr6:4673400-4675000	Weak transcription	HSMMtube	muscle
17	chr6:4673600-4673800	Enhancers	Aorta	Aorta
18	chr6:4673600-4673800	Enhancers	Brain Angular Gyrus	brain
19	chr6:4673600-4674000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:4673600-4674000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:4673600-4675000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:4673600-4677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links