Variant report

Variant	rs761181
Chromosome Location	chr6:4668941-4668942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4668064..4670933-chr6:4672620..4676191,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1040542	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1040543	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13195286	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13215768	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073041	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076518	0.93[EUR][1000 genomes]
rs372218	0.86[ASN][1000 genomes]
rs423699	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs440298	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs451971	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4960015	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs761180	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761182	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759755	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9378898	0.93[EUR][1000 genomes]
rs9378899	0.93[EUR][1000 genomes]
rs9378900	0.93[EUR][1000 genomes]
rs9378901	0.93[EUR][1000 genomes]
rs9378902	0.92[EUR][1000 genomes]
rs9392060	0.96[EUR][1000 genomes]
rs9392621	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9504195	0.93[EUR][1000 genomes]
rs9504197	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4664000-4669600	Enhancers	K562	blood
2	chr6:4665000-4670400	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
4	chr6:4665200-4670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:4666000-4670400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:4666600-4672400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:4667800-4669200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:4667800-4669400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:4668000-4669000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:4668000-4669200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:4668000-4669400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:4668000-4669400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:4668000-4669600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:4668200-4669000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:4668200-4669000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:4668200-4675000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:4668400-4669400	Enhancers	Osteobl	bone
18	chr6:4668400-4669600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:4668600-4669000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:4668600-4669000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:4668600-4669200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:4668600-4669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:4668600-4669400	Enhancers	HSMM	muscle
24	chr6:4668600-4669400	Enhancers	NH-A	brain
25	chr6:4668600-4669600	Enhancers	HSMMtube	muscle
26	chr6:4668600-4669600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links