Variant report

Variant	rs13215989
Chromosome Location	chr6:24203605-24203606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11753132	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11965009	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13190872	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13200434	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13200769	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2153887	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547978	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6899503	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906746	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6907507	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912240	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6913130	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6919231	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6934081	0.82[AMR][1000 genomes]
rs6934297	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6934501	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6934854	0.81[AMR][1000 genomes]
rs6939523	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6940864	0.85[EUR][1000 genomes]
rs7746318	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7750699	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7750813	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7768260	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7768511	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9443370	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9443374	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9443379	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9443380	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9448009	0.81[EUR][1000 genomes]
rs9448026	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9448046	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9448047	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24196400-24205400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24199400-24204600	Weak transcription	HepG2	liver
3	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
4	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney

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