Variant report

Variant	rs7746318
Chromosome Location	chr6:77940529-77940530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11753132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756056	0.98[AFR][1000 genomes]
rs11758490	0.98[AFR][1000 genomes]
rs11965009	0.85[AMR][1000 genomes]
rs13190872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13194850	0.98[AFR][1000 genomes]
rs13200434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13200769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13215989	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2000223	0.80[EUR][1000 genomes]
rs2153887	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4547978	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6899503	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6906746	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6907507	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6913130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6919231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920021	0.98[AFR][1000 genomes]
rs6934081	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6934297	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6934501	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6934854	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6939523	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6939863	0.98[AFR][1000 genomes]
rs6940394	0.98[AFR][1000 genomes]
rs6940864	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745859	0.95[AFR][1000 genomes]
rs7750699	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7750813	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7768260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7768511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9443366	0.98[AFR][1000 genomes]
rs9443370	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9443371	0.80[EUR][1000 genomes]
rs9443372	0.80[EUR][1000 genomes]
rs9443374	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9443379	0.87[AMR][1000 genomes]
rs9443380	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9448006	0.98[AFR][1000 genomes]
rs9448007	0.98[AFR][1000 genomes]
rs9448009	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9448014	0.82[AMR][1000 genomes]
rs9448018	0.80[EUR][1000 genomes]
rs9448026	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9448036	0.81[AMR][1000 genomes]
rs9448046	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9448047	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3417770	chr6:77670473-77963253	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3402238	chr6:77670497-77963278	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1022311	chr6:77684420-77941524	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886223	chr6:77686247-77950949	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1033731	chr6:77750293-77941524	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv538323	chr6:77750293-77941524	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv603808	chr6:77918905-77949743	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv1795494	chr6:77933591-77953420	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77933200-77957000	Weak transcription	Aorta	Aorta

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