Variant report

Variant	rs1321762
Chromosome Location	chr6:82186912-82186913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1145889	0.85[CEU][hapmap]
rs12213217	0.90[EUR][1000 genomes]
rs12213269	0.90[EUR][1000 genomes]
rs1276882	0.84[CEU][hapmap]
rs1419030	0.86[CHB][hapmap]
rs4126327	0.90[EUR][1000 genomes]
rs6900044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6910041	0.80[CEU][hapmap]
rs9350930	0.85[CEU][hapmap]
rs9353014	0.90[EUR][1000 genomes]
rs9359497	0.90[EUR][1000 genomes]
rs9443924	0.90[EUR][1000 genomes]
rs9449340	0.90[EUR][1000 genomes]
rs9449342	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82185000-82187400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:82185200-82187200	Enhancers	Osteobl	bone
3	chr6:82185200-82187600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82186400-82187200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82186400-82187200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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