Variant report

Variant	rs1276882
Chromosome Location	chr6:82327577-82327578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82327148..82328693-chr6:82392956..82395035,2	MCF-7	breast:
2	chr6:82327003..82328794-chr6:82330643..82333134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212336	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1145880	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1145887	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1145889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195387	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12208792	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1276879	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1276880	0.85[AMR][1000 genomes]
rs1276881	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1276883	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322896	0.82[AMR][1000 genomes]
rs1341226	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1417716	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1917065	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2025273	0.83[CHB][hapmap]
rs2027435	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4591906	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4706898	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6900044	0.80[CEU][hapmap]
rs6906526	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6910041	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6912820	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs912029	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9344195	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9344199	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9344202	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9344203	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9344204	0.85[AMR][1000 genomes]
rs9344205	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9350930	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9353018	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9361839	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9443930	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9449342	0.80[EUR][1000 genomes]
rs9449346	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta
2	chr6:82324400-82328000	Weak transcription	Left Ventricle	heart

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